<?xml version="1.0" encoding="utf-8" standalone="yes"?><rss version="2.0" xmlns:atom="http://www.w3.org/2005/Atom"><channel><title>Portfolio on Miguel Madrid-Mencía</title><link>https://mimame.dev/portfolio/</link><description>Recent content in Portfolio on Miguel Madrid-Mencía</description><generator>Hugo -- gohugo.io</generator><language>en</language><copyright>© 2026 Miguel Madrid-Mencía</copyright><lastBuildDate>Thu, 11 Apr 2024 00:00:00 +0000</lastBuildDate><atom:link href="https://mimame.dev/portfolio/index.xml" rel="self" type="application/rss+xml"/><item><title>Invention: ML Pipeline for Genome-Wide Association Studies (Patent)</title><link>https://mimame.dev/portfolio/genomics-patent/</link><pubDate>Thu, 11 Apr 2024 00:00:00 +0000</pubDate><guid>https://mimame.dev/portfolio/genomics-patent/</guid><description>Co-authored patent US20240120024A1 for a machine learning approach that significantly improves causal gene identification in GWAS. Assignee: Illumina Inc.</description><media:content xmlns:media="http://search.yahoo.com/mrss/" url="https://mimame.dev/portfolio/genomics-patent/feature.png"/></item><item><title>GEMDeCan: Tumor Immune Microenvironment Deconvolution</title><link>https://mimame.dev/portfolio/gemdecan/</link><pubDate>Fri, 09 Apr 2021 00:00:00 +0000</pubDate><guid>https://mimame.dev/portfolio/gemdecan/</guid><description>Snakemake pipelines for tumor immune microenvironment deconvolution from RNA-seq and DNA methylation data, applied to 7,000+ TCGA samples and 166 immunotherapy patients.</description><media:content xmlns:media="http://search.yahoo.com/mrss/" url="https://mimame.dev/portfolio/gemdecan/feature.jpg"/></item><item><title>GARDEN-NET &amp; ChAseR: 3D Chromatin Interaction Networks</title><link>https://mimame.dev/portfolio/garden-net/</link><pubDate>Thu, 07 May 2020 00:00:00 +0000</pubDate><guid>https://mimame.dev/portfolio/garden-net/</guid><description>R package and web-based visualization tool for the analysis and integration of epigenomic data within 3D chromatin networks. Published in Nucleic Acids Research.</description><media:content xmlns:media="http://search.yahoo.com/mrss/" url="https://mimame.dev/portfolio/garden-net/feature.png"/></item><item><title>OpenEBench Embeddable Benchmarking Widget</title><link>https://mimame.dev/portfolio/openebench-widget/</link><pubDate>Tue, 01 May 2018 00:00:00 +0000</pubDate><guid>https://mimame.dev/portfolio/openebench-widget/</guid><description>Sole-author d3.js radial arc widget for the ELIXIR European scientific benchmarking platform, embeddable on any scientific tool website.</description><media:content xmlns:media="http://search.yahoo.com/mrss/" url="https://mimame.dev/portfolio/openebench-widget/feature.png"/></item><item><title>AQuAS: Health System Observatory Visualization Platform</title><link>https://mimame.dev/portfolio/aquas/</link><pubDate>Sat, 01 Jul 2017 00:00:00 +0000</pubDate><guid>https://mimame.dev/portfolio/aquas/</guid><description>Interactive geospatial platform for the Catalan Agency for Health Quality and Evaluation to visualize and analyze regional health system indicators.</description><media:content xmlns:media="http://search.yahoo.com/mrss/" url="https://mimame.dev/portfolio/aquas/feature.jpg"/></item><item><title>Structure-PPi v2.0</title><link>https://mimame.dev/portfolio/structure-ppi/</link><pubDate>Sun, 01 May 2016 00:00:00 +0000</pubDate><guid>https://mimame.dev/portfolio/structure-ppi/</guid><description>Module for annotating cancer-related single-nucleotide variants at protein-protein interfaces, integrating Appris, Interactome3D, and COSMIC.</description><media:content xmlns:media="http://search.yahoo.com/mrss/" url="https://mimame.dev/portfolio/structure-ppi/feature.png"/></item><item><title>Computer Vision adapted to Optical Coherence Tomographies (Bachelor's Thesis)</title><link>https://mimame.dev/portfolio/bachelor-thesis/</link><pubDate>Wed, 01 Jul 2015 00:00:00 +0000</pubDate><guid>https://mimame.dev/portfolio/bachelor-thesis/</guid><description>Automated image processing algorithm using Python and OpenCV to measure uvea thickness and monitor uveitis evolution in OCT scans.</description><media:content xmlns:media="http://search.yahoo.com/mrss/" url="https://mimame.dev/portfolio/bachelor-thesis/feature.png"/></item></channel></rss>