Miguel Madrid-Mencía

Miguel Madrid-Mencía

Senior Backend & Cloud Engineer at the intersection of genomics and production ML.

Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks

Published in Nucleic Acids Research, 2020

This paper presents GARDEN-NET and ChAseR, tools for visualizing and analyzing epigenomic data on 3D chromatin interaction networks. We demonstrate their utility by exploring chromatin assortativity in human haematopoietic cells, identifying epigenomic features strongly associated with 3D genome architecture.

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Recommended citation: Madrid-Mencía, M., Raineri, E., Cao, T. B. N., & Pancaldi, V. (2020). "Using GARDEN-NET and ChAseR to explore human haematopoietic 3D chromatin interaction networks." Nucleic Acids Research, 48(8), 4066-4080.
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